Heterogeneous nuclear ribonucleoprotein U (Q6IMY8)

Uniprot ID Q6IMY8
Protein Name Heterogeneous nuclear ribonucleoprotein U
Gene Name Hnrnpu
Species Rattus norvegicus (Rat)
Signal peptide(a) N Secretome P(b)
Function DNA-and RNA-binding protein involved in several cellular processes such as nuclear chromatin organization, telomere-length regulation, transcription, mRNA alternative splicing and stability, Xist-mediated transcriptional silencing and mitotic cell progression. Plays a role in the regulation of interphase large-scale gene-rich chromatin organization through chromatin-associated RNAs (caRNAs) in a transcription-dependent manner, and thereby maintains genomic stability. Required for the localization of the long non-coding Xist RNA on the inactive chromosome X (Xi) and the subsequent initiation and maintenance of X-linked transcriptional gene silencing during X-inactivation (By similarity). Required for the topoisomerase TOP2A protein stability and activity in a RNA-dependent manner (PubMed:20554522). Plays a role as a RNA polymerase II (Pol II) holoenzyme transcription regulator. Promotes transcription initiation by direct association with the core-TFIIH basal transcription factor complex for the assembly of a functional pre-initiation complex with Pol II in a actin-dependent manner. Blocks Pol II transcription elongation activity by inhibiting the C-terminal domain (CTD) phosphorylation of Pol II and dissociates from Pol II pre-initiation complex prior to productive transcription elongation. Positively regulates CBX5-induced transcriptional gene silencing and retention of CBX5 in the nucleus. Negatively regulates glucocorticoid-mediated transcriptional activation. Key regulator of transcription initiation and elongation in embryonic stem cells upon leukemia inhibitory factor (LIF) signaling. Involved in the long non-coding RNA H19-mediated Pol II transcriptional repression. Participates in the circadian regulation of the core clock component ARNTL/BMAL1 transcription. Plays a role in the regulation of telomere length. Plays a role as a global pre-mRNA alternative splicing modulator by regulating U2 small nuclear ribonucleoprotein (snRNP) biogenesis. Plays a role in mRNA stability. Component of the CRD-mediated complex that promotes MYC mRNA stabilization. Enhances the expression of specific genes, such as tumor necrosis factor TNFA, by regulating mRNA stability, possibly through binding to the 3'-untranslated region (UTR). Plays a role in mitotic cell cycle regulation. Involved in the formation of stable mitotic spindle microtubules (MTs) attachment to kinetochore, spindle organization and chromosome congression. Phosphorylation at Ser-58 by PLK1 is required for chromosome alignement and segregation and progression through mitosis. Contributes also to the targeting of AURKA to mitotic spindle MTs (By similarity). Binds to double-and single-stranded DNA and RNA, poly(A), poly(C) and poly(G) oligoribonucleotides (PubMed:20554522). Binds to chromatin-associated RNAs (caRNAs) (By similarity). Associates with chromatin to scaffold/matrix attachment region (S/MAR) elements in DNA (PubMed:8509422). Associates with chromatin in a chromatin-associated RNAs (caRNAs)-dependent manner. Binds to the Xist RNA. Binds the long non-coding H19 RNA. Binds to SMN1/2 pre-mRNAs at G/U-rich regions. Binds to small nuclear RNAs (snRNAs). Binds to the 3'-UTR of TNFA mRNA. Binds (via RNA-binding RGG-box region) to the long non-coding Xist RNA; this binding is direct and bridges the Xist RNA and the inactive chromosome X (Xi). Also negatively regulates embryonic stem cell differentiation upon LIF signaling. Required for embryonic development (By similarity). Binds to brown fat long non-coding RNA 1 (Blnc1); facilitates the recruitment of Blnc1 by ZBTB7B required to drive brown and beige fat development and thermogenesis (By similarity). .
GO - Molecular function
  • actin binding : ISO:RGD
  • ATP binding : ISS:UniProtKB
  • chromatin binding : ISS:UniProtKB
  • chromatin DNA binding : ISO:RGD
  • DNA binding : ISO:RGD
  • double-stranded DNA binding : ISO:RGD
  • double-stranded RNA binding : ISO:RGD
  • identical protein binding : ISS:UniProtKB
  • mRNA 3'-UTR binding : ISO:RGD
  • poly(A) binding : ISO:RGD
  • poly(C) RNA binding : ISO:RGD
  • poly(G) binding : IDA:RGD
  • pre-mRNA binding : ISO:RGD
  • promoter-specific chromatin binding : IDA:RGD
  • protein-containing complex binding : ISO:RGD
  • ribonucleoprotein complex binding : IPI:RGD
  • RNA binding : IDA:RGD
  • RNA polymerase II C-terminal domain binding : ISS:UniProtKB
  • RNA polymerase II cis-regulatory region sequence-specific DNA binding : ISO:RGD
  • RNA polymerase II complex binding : ISO:RGD
  • sequence-specific DNA binding : ISS:UniProtKB
  • sequence-specific double-stranded DNA binding : ISO:RGD
  • single-stranded DNA binding : ISO:RGD
  • single-stranded RNA binding : ISO:RGD
  • snRNA binding : ISO:RGD
  • telomerase RNA binding : ISO:RGD
  • TFIIH-class transcription factor complex binding : ISO:RGD
  • transcription corepressor activity : ISO:RGD
GO - Biological process
  • adaptive thermogenesis : ISS:UniProtKB
  • cardiac muscle cell development : ISO:RGD
  • cell cycle : IEA:UniProtKB-KW
  • cell division : IEA:UniProtKB-KW
  • cellular response to dexamethasone stimulus : IDA:RGD
  • cellular response to glucocorticoid stimulus : ISO:RGD
  • cellular response to leukemia inhibitory factor : ISS:UniProtKB
  • chromatin organization : IEA:UniProtKB-KW
  • circadian regulation of gene expression : ISO:RGD
  • CRD-mediated mRNA stabilization : ISO:RGD
  • dendritic transport of messenger ribonucleoprotein complex : ISO:RGD
  • dosage compensation by inactivation of X chromosome : ISO:RGD
  • maintenance of protein location in nucleus : ISO:RGD
  • mRNA processing : IEA:UniProtKB-KW
  • mRNA stabilization : ISO:RGD
  • negative regulation of kinase activity : ISO:RGD
  • negative regulation of stem cell differentiation : ISS:UniProtKB
  • negative regulation of telomere maintenance via telomerase : ISO:RGD
  • negative regulation of transcription by RNA polymerase II : ISO:RGD
  • negative regulation of transcription elongation from RNA polymerase II promoter : ISO:RGD
  • positive regulation of attachment of mitotic spindle microtubules to kinetochore : ISS:UniProtKB
  • positive regulation of brown fat cell differentiation : ISS:UniProtKB
  • positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity : IDA:RGD
  • positive regulation of gene expression : IMP:RGD
  • positive regulation of stem cell proliferation : ISO:RGD
  • positive regulation of transcription by RNA polymerase II : ISS:UniProtKB
  • protein localization to spindle microtubule : ISS:UniProtKB
  • regulation of alternative mRNA splicing, via spliceosome : ISO:RGD
  • regulation of chromatin organization : ISS:UniProtKB
  • regulation of mitotic cell cycle : ISS:UniProtKB
  • regulation of mitotic spindle assembly : ISS:UniProtKB
  • RNA localization to chromatin : ISO:RGD
  • RNA splicing : IEA:UniProtKB-KW
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(a) The Signal peptide D-score cutoff for "YES"(having signal peptide) is 0.45.
(b) Non-classically secreted proteins should obtain an NN-score(Neural Networks score) exceeding the normal threshold of 0.5, but not at the same time be predicted to contain a signal peptide.