Agrin (O00468)

Uniprot ID O00468
Protein Name Agrin
Gene Name AGRN
Species Homo sapiens (Human)
Signal peptide(a) N Secretome P(b) 0.347
Function [Isoform 1]: heparan sulfate basal lamina glycoprotein that plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ) and directs key events in postsynaptic differentiation. Component of the AGRN-LRP4 receptor complex that induces the phosphorylation and activation of MUSK. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Calcium ions are required for maximal AChR clustering. AGRN function in neurons is highly regulated by alternative splicing, glycan binding and proteolytic processing. Modulates calcium ion homeostasis in neurons, specifically by inducing an increase in cytoplasmic calcium ions. Functions differentially in the central nervous system (CNS) by inhibiting the alpha(3)-subtype of Na+/K+-ATPase and evoking depolarization at CNS synapses. This secreted isoform forms a bridge, after release from motor neurons, to basal lamina through binding laminin via the NtA domain.[Isoform 2]: transmembrane form that is the predominate form in neurons of the brain, induces dendritic filopodia and synapse formation in mature hippocampal neurons in large part due to the attached glycosaminoglycan chains and the action of Rho-family GTPases.Isoform 1, isoform 4 and isoform 5: neuron-specific (z+) isoforms that contain C-terminal insertions of 8-19 AA are potent activators of AChR clustering. Isoform 5, agrin (z+8), containing the 8-AA insert, forms a receptor complex in myotubules containing the neuronal AGRN, the muscle-specific kinase MUSK and LRP4, a member of the LDL receptor family. The splicing factors, NOVA1 and NOVA2, regulate AGRN splicing and production of the 'z' isoforms.Isoform 3 and isoform 6: lack any 'z' insert, are muscle-specific and may be involved in endothelial cell differentiation.[Agrin N-terminal 110 kDa subunit]: is involved in regulation of neurite outgrowth probably due to the presence of the glycosaminoglcan (GAG) side chains of heparan and chondroitin sulfate attached to the Ser/Thr-and Gly/Ser-rich regions. Also involved in modulation of growth factor signaling (By similarity). .[Agrin C-terminal 22 kDa fragment]: this released fragment is important for agrin signaling and to exert a maximal dendritic filopodia-inducing effect. All 'z' splice variants (z+) of this fragment also show an increase in the number of filopodia.
GO - Molecular function
  • calcium ion binding : ISS:UniProtKB
  • chondroitin sulfate binding : ISS:UniProtKB
  • dystroglycan binding : ISS:UniProtKB
  • heparan sulfate proteoglycan binding : ISS:UniProtKB
  • laminin binding : TAS:UniProtKB
  • sialic acid binding : ISS:UniProtKB
  • structural constituent of cytoskeleton : TAS:UniProtKB
GO - Biological process
  • animal organ morphogenesis : IBA:GO_Central
  • clustering of voltage-gated sodium channels : TAS:UniProtKB
  • dendrite development : IBA:GO_Central
  • extracellular matrix organization : TAS:Reactome
  • G protein-coupled acetylcholine receptor signaling pathway : TAS:UniProtKB
  • glycosaminoglycan biosynthetic process : TAS:Reactome
  • glycosaminoglycan catabolic process : TAS:Reactome
  • motor neuron axon guidance : IBA:GO_Central
  • neuromuscular junction development : IBA:GO_Central
  • positive regulation of filopodium assembly : ISS:UniProtKB
  • positive regulation of GTPase activity : ISS:UniProtKB
  • positive regulation of synaptic growth at neuromuscular junction : ISS:UniProtKB
  • positive regulation of transcription by RNA polymerase II : ISS:UniProtKB
  • receptor clustering : IDA:UniProtKB
  • retinoid metabolic process : TAS:Reactome
  • signal transduction : TAS:UniProtKB
  • synapse organization : TAS:UniProtKB
  • tissue development : IBA:GO_Central
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(a) The Signal peptide D-score cutoff for "YES"(having signal peptide) is 0.45.
(b) Non-classically secreted proteins should obtain an NN-score(Neural Networks score) exceeding the normal threshold of 0.5, but not at the same time be predicted to contain a signal peptide.