Synaptic functional regulator FMR1 (P35922)

Uniprot ID P35922
Protein Name Synaptic functional regulator FMR1
Gene Name Fmr1
Species Mus musculus (Mouse)
Signal peptide(a) N Secretome P(b) 0.0
Function Multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic local protein synthesis of a subset of mRNAs (PubMed:11438589, PubMed:12032354, PubMed:15475576, PubMed:16631377, PubMed:16790844, PubMed:17417632, PubMed:17548835, PubMed:18539120, PubMed:18653529, PubMed:19640847, PubMed:19166269, PubMed:20159450, PubMed:21784246, PubMed:23235829, PubMed:24813610). Plays a role in the alternative splicing of its own mRNA (PubMed:18653529). Plays a role in mRNA nuclear export (PubMed:16790844). Together with export factor NXF2, is involved in the regulation of the NXF1 mRNA stability in neurons (PubMed:17548835). Stabilizes the scaffolding postsynaptic density protein DLG4/PSD-95 and the myelin basic protein MBP mRNAs in hippocampal neurons and glial cells, respectively; this stabilization is further increased in response to metabotropic glutamate receptor (mGluR) stimulation (PubMed:17417632). Plays a role in selective delivery of a subset of dendritic mRNAs to synaptic sites in response to mGluR activation in a kinesin-dependent manner (PubMed:18539120). Plays a role as a repressor of mRNA translation during the transport of dendritic mRNAs to postnyaptic dendritic spines (PubMed:11376146, PubMed:12581522, PubMed:14570712, PubMed:12927206, PubMed:15475576, PubMed:16908410, PubMed:18805096, PubMed:19640847, PubMed:21784246, PubMed:23235829). Component of the CYFIP1-EIF4E-FMR1 complex which blocks cap-dependent mRNA translation initiation (PubMed:18805096). Represses mRNA translation by stalling ribosomal translocation during elongation (PubMed:21784246). Reports are contradictory with regards to its ability to mediate translation inhibition of (MBP) mRNA in oligodendrocytes (PubMed:14613971, PubMed:23891804). Also involved in the recruitment of the RNA helicase MOV10 to a subset of mRNAs and hence regulates microRNA (miRNA)-mediated translational repression by AGO2 (PubMed:20159450, PubMed:25464849). Facilitates the assembly of miRNAs on specific target mRNAs (By similarity). Plays also a role as an activator of mRNA translation of a subset of dendritic mRNAs at synapses (PubMed:14614133, PubMed:14613971, PubMed:15548614, PubMed:19640847, PubMed:19166269, PubMed:21490210). In response to mGluR stimulation, FMR1-target mRNAs are rapidly derepressed, allowing for local translation at synapses (PubMed:16908410, PubMed:17507556, PubMed:19640847). Binds to a large subset of dendritic mRNAs that encode a myriad of proteins involved in pre-and postsynaptic functions (PubMed:11719188, PubMed:11376146, PubMed:14613971, PubMed:17507556, PubMed:21784246, PubMed:21490210, PubMed:24349419). Binds to 5'-ACU[GU]-3' and/or 5'-[AU]GGA-3' RNA consensus sequences within mRNA targets, mainly at coding sequence (CDS) and 3'-untranslated region (UTR) and less frequently at 5'-UTR (By similarity). Binds to intramolecular G-quadruplex structures in the 5'-or 3'-UTRs of mRNA targets (PubMed:25692235). Binds to G-quadruplex structures in the 3'-UTR of its own mRNA (By similarity). Binds also to RNA ligands harboring a kissing complex (kc) structure; this binding may mediate the association of FMR1 with polyribosomes (By similarity). Binds mRNAs containing U-rich target sequences (By similarity). Binds to a triple stem-loop RNA structure, called Sod1 stem loop interacting with FMRP (SoSLIP), in the 5'-UTR region of superoxide dismutase SOD1 mRNA (PubMed:19166269). Binds to the dendritic, small non-coding brain cytoplasmic RNA 1 (BC1); which may increase the association of the CYFIP1-EIF4E-FMR1 complex to FMR1 target mRNAs at synapses (PubMed:12581522, PubMed:18805096). Associates with export factor NXF1 mRNA-containing ribonucleoprotein particles (mRNPs) in a NXF2-dependent manner (PubMed:17548835). Binds to a subset of miRNAs in the brain (PubMed:20159450). May associate with nascent transcripts in a nuclear protein NXF1-dependent manner (By similarity). In vitro, binds to RNA homopolymer; preferentially on poly(G) and to a lesser extent on poly(U), but not on poly(A) or poly(C) (By similarity). Moreover, plays a role in the modulation of the sodium-activated potassium channel KCNT1 gating activity (PubMed:20512134). Negatively regulates the voltage-dependent calcium channel current density in soma and presynaptic terminals of dorsal root ganglion (DRG) neurons, and hence regulates synaptic vesicle exocytosis (By similarity). Modulates the voltage-dependent calcium channel CACNA1B expression at the plasma membrane by targeting the channels for proteosomal degradation (PubMed:24709664). Plays a role in regulation of MAP1B-dependent microtubule dynamics during neuronal development (PubMed:15475576). Recently, has been shown to play a translation-independent role in the modulation of presynaptic action potential (AP) duration and neurotransmitter release via large-conductance calcium-activated potassium (BK) channels in hippocampal and cortical excitatory neurons (PubMed:25561520). Finally, FMR1 may be involved in the control of DNA damage response (DDR) mechanisms through the regulation of ATR-dependent signaling pathways such as histone H2AFX/H2A.x and BRCA1 phosphorylations (PubMed:24813610). .
GO - Molecular function
  • chromatin binding : IDA:UniProtKB
  • dynein complex binding : IDA:UniProtKB
  • G-quadruplex RNA binding : ISS:UniProtKB
  • identical protein binding : ISO:MGI
  • ion channel binding : ISO:MGI
  • methylated histone binding : ISS:UniProtKB
  • microtubule binding : IDA:UniProtKB
  • miRNA binding : IDA:UniProtKB
  • mRNA 3'-UTR binding : IDA:UniProtKB
  • mRNA 5'-UTR binding : ISS:UniProtKB
  • mRNA binding : IDA:UniProtKB
  • poly(G) binding : ISS:UniProtKB
  • poly(U) RNA binding : ISS:UniProtKB
  • protein domain specific binding : ISO:MGI
  • protein heterodimerization activity : ISS:UniProtKB
  • protein homodimerization activity : ISS:UniProtKB
  • protein kinase binding : ISO:MGI
  • protein phosphatase binding : ISO:MGI
  • ribosome binding : ISO:MGI
  • RNA 7-methylguanosine cap binding : ISO:MGI
  • RNA binding : IDA:MGI
  • RNA stem-loop binding : ISS:UniProtKB
  • RNA strand annealing activity : ISS:UniProtKB
  • sequence-specific mRNA binding : ISS:UniProtKB
  • siRNA binding : ISS:UniProtKB
  • translation initiation factor binding : ISO:MGI
  • translation repressor activity : IDA:UniProtKB
GO - Biological process
  • anterograde axonal transport : IMP:SynGO
  • cellular response to DNA damage stimulus : IDA:UniProtKB
  • cellular response to hydroxyurea : IDA:UniProtKB
  • cellular response to UV : IDA:UniProtKB
  • cellular response to virus : ISO:MGI
  • central nervous system development : IMP:MGI
  • dendritic spine development : IGI:MGI
  • gene silencing by RNA : IEA:UniProtKB-KW
  • glutamate receptor signaling pathway : IDA:UniProtKB
  • modulation by host of viral RNA genome replication : ISO:MGI
  • mRNA processing : IEA:UniProtKB-KW
  • mRNA transport : IDA:UniProtKB
  • negative regulation of cytoplasmic translation : IDA:UniProtKB
  • negative regulation of gene expression : IMP:UniProtKB
  • negative regulation of long term synaptic depression : IMP:UniProtKB
  • negative regulation of mRNA catabolic process : ISO:MGI
  • negative regulation of neuron apoptotic process : ISO:MGI
  • negative regulation of neuron differentiation : ISO:MGI
  • negative regulation of protein processing : ISO:MGI
  • negative regulation of receptor internalization : ISO:MGI
  • negative regulation of synaptic vesicle exocytosis : ISS:UniProtKB
  • negative regulation of translation : IDA:UniProtKB
  • negative regulation of translational initiation : IDA:UniProtKB
  • negative regulation of voltage-gated calcium channel activity : ISS:UniProtKB
  • positive regulation of dendritic spine development : IDA:UniProtKB
  • positive regulation of filopodium assembly : IDA:UniProtKB
  • positive regulation of gene expression : ISO:MGI
  • positive regulation of gene silencing by miRNA : IDA:UniProtKB
  • positive regulation of histone phosphorylation : IDA:UniProtKB
  • positive regulation of intracellular transport of viral material : ISO:MGI
  • positive regulation of mRNA binding : ISS:UniProtKB
  • positive regulation of proteasomal protein catabolic process : IDA:UniProtKB
  • positive regulation of protein phosphorylation : ISO:MGI
  • positive regulation of receptor internalization : ISS:UniProtKB
  • positive regulation of response to DNA damage stimulus : IDA:UniProtKB
  • positive regulation of translation : IMP:CACAO
  • regulation of alternative mRNA splicing, via spliceosome : IDA:UniProtKB
  • regulation of dendritic spine development : IMP:UniProtKB
  • regulation of filopodium assembly : IMP:UniProtKB
  • regulation of gene silencing by miRNA : ISO:MGI
  • regulation of modification of synaptic structure : IMP:SynGO
  • regulation of mRNA stability : IMP:UniProtKB
  • regulation of neuronal action potential : ISS:UniProtKB
  • regulation of neurotransmitter secretion : ISS:UniProtKB
  • regulation of translation at postsynapse, modulating synaptic transmission : IMP:SynGO
  • RNA splicing : IEA:UniProtKB-KW
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(a) The Signal peptide D-score cutoff for "YES"(having signal peptide) is 0.45.
(b) Non-classically secreted proteins should obtain an NN-score(Neural Networks score) exceeding the normal threshold of 0.5, but not at the same time be predicted to contain a signal peptide.