X-ray repair cross-complementing protein 5 (P13010)

Uniprot ID P13010
Protein Name X-ray repair cross-complementing protein 5
Gene Name XRCC5
Species Homo sapiens (Human)
Signal peptide(a) N Secretome P(b) 0.535
Function Single-stranded DNA-dependent ATP-dependent helicase. Has a role in chromosome translocation. The DNA helicase II complex binds preferentially to fork-like ends of double-stranded DNA in a cell cycle-dependent manner. It works in the 3'-5' direction. Binding to DNA may be mediated by XRCC6. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair and V(D)J recombination. The XRCC5/6 dimer acts as regulatory subunit of the DNA-dependent protein kinase complex DNA-PK by increasing the affinity of the catalytic subunit PRKDC to DNA by 100-fold. The XRCC5/6 dimer is probably involved in stabilizing broken DNA ends and bringing them together (PubMed:12145306, PubMed:20383123, PubMed:7957065, PubMed:8621488). The assembly of the DNA-PK complex to DNA ends is required for the NHEJ ligation step. In association with NAA15, the XRCC5/6 dimer binds to the osteocalcin promoter and activates osteocalcin expression (PubMed:20383123). The XRCC5/6 dimer probably also acts as a 5'-deoxyribose-5-phosphate lyase (5'-dRP lyase), by catalyzing the beta-elimination of the 5' deoxyribose-5-phosphate at an abasic site near double-strand breaks. XRCC5 probably acts as the catalytic subunit of 5'-dRP activity, and allows to 'clean' the termini of abasic sites, a class of nucleotide damage commonly associated with strand breaks, before such broken ends can be joined. The XRCC5/6 dimer together with APEX1 acts as a negative regulator of transcription (PubMed:8621488). Plays a role in the regulation of DNA virus-mediated innate immune response by assembling into the HDP-RNP complex, a complex that serves as a platform for IRF3 phosphorylation and subsequent innate immune response activation through the cGAS-STING pathway. .
GO - Molecular function
  • ATP binding : IEA:UniProtKB-KW
  • ATP-dependent DNA helicase activity : TAS:ProtInc
  • damaged DNA binding : IEA:InterPro
  • DNA binding : NAS:UniProtKB
  • double-stranded DNA binding : TAS:ProtInc
  • enzyme activator activity : TAS:BHF-UCL
  • protein C-terminus binding : IPI:UniProtKB
  • protein-containing complex binding : IPI:BHF-UCL
  • RNA binding : IDA:UniProtKB
  • telomeric DNA binding : IDA:BHF-UCL
  • transcription regulatory region DNA binding : IDA:BHF-UCL
  • ubiquitin protein ligase binding : IPI:UniProtKB
GO - Biological process
  • activation of innate immune response : IDA:UniProtKB
  • brain development : IEA:Ensembl
  • cell proliferation : IEA:Ensembl
  • cellular hyperosmotic salinity response : IEA:Ensembl
  • cellular response to fatty acid : IEA:Ensembl
  • cellular response to gamma radiation : IDA:UniProtKB
  • cellular response to leukemia inhibitory factor : IEA:Ensembl
  • cellular response to X-ray : IEA:Ensembl
  • DNA recombination : TAS:ProtInc
  • double-strand break repair : IMP:BHF-UCL
  • double-strand break repair via nonhomologous end joining : IDA:UniProtKB
  • establishment of integrated proviral latency : TAS:Reactome
  • hematopoietic stem cell differentiation : IEA:Ensembl
  • innate immune response : IEA:UniProtKB-KW
  • negative regulation of t-circle formation : IMP:BHF-UCL
  • negative regulation of transcription, DNA-templated : IMP:UniProtKB
  • neutrophil degranulation : TAS:Reactome
  • positive regulation of catalytic activity : TAS:BHF-UCL
  • positive regulation of neurogenesis : IEA:Ensembl
  • positive regulation of protein kinase activity : IDA:CAFA
  • positive regulation of telomerase activity : TAS:BHF-UCL
  • positive regulation of telomere maintenance via telomerase : IMP:BHF-UCL
  • positive regulation of type I interferon production : TAS:Reactome
  • protein localization to chromosome, telomeric region : TAS:BHF-UCL
  • regulation of smooth muscle cell proliferation : IMP:UniProtKB
  • regulation of telomere maintenance : TAS:BHF-UCL
  • response to drug : IEA:Ensembl
  • telomere maintenance : IEA:InterPro
  • transcription, DNA-templated : IEA:UniProtKB-KW
Back
(a) The Signal peptide D-score cutoff for "YES"(having signal peptide) is 0.45.
(b) Non-classically secreted proteins should obtain an NN-score(Neural Networks score) exceeding the normal threshold of 0.5, but not at the same time be predicted to contain a signal peptide.