Apolipoprotein E (P02650)

Uniprot ID P02650
Protein Name Apolipoprotein E
Gene Name Apoe
Species Rattus norvegicus (Rat)
Signal peptide(a) Y Secretome P(b)
Function APOE is an apolipoprotein, a protein associating with lipid particles, that mainly functions in lipoprotein-mediated lipid transport between organs via the plasma and interstitial fluids. APOE is a core component of plasma lipoproteins and is involved in their production, conversion and clearance. Apoliproteins are amphipathic molecules that interact both with lipids of the lipoprotein particle core and the aqueous environment of the plasma. As such, APOE associates with chylomicrons, chylomicron remnants, very low density lipoproteins (VLDL) and intermediate density lipoproteins (IDL) but shows a preferential binding to high-density lipoproteins (HDL). It also binds a wide range of cellular receptors including the LDL receptor/LDLR and the very low-density lipoprotein receptor/VLDLR that mediate the cellular uptake of the APOE-containing lipoprotein particles. Finally, APOE has also a heparin-binding activity and binds heparan-sulfate proteoglycans on the surface of cells, a property that supports the capture and the receptor-mediated uptake of APOE-containing lipoproteins by cells. .
GO - Molecular function
  • amyloid-beta binding : IDA:RGD
  • antioxidant activity : ISO:RGD
  • cholesterol transfer activity : ISO:RGD
  • heparan sulfate proteoglycan binding : ISS:UniProtKB
  • heparin binding : ISS:UniProtKB
  • hydroxyapatite binding : IDA:RGD
  • identical protein binding : ISS:UniProtKB
  • lipid binding : ISO:RGD
  • lipid transporter activity : IDA:RGD
  • lipoprotein particle binding : ISO:RGD
  • low-density lipoprotein particle receptor binding : ISS:UniProtKB
  • metal chelating activity : ISO:RGD
  • phosphatidylcholine-sterol O-acyltransferase activator activity : ISO:RGD
  • phospholipid binding : IDA:RGD
  • protein dimerization activity : ISO:RGD
  • protein homodimerization activity : ISO:RGD
  • protein-containing complex binding : ISO:RGD
  • signaling receptor binding : IPI:UniProtKB
  • tau protein binding : ISO:RGD
  • very-low-density lipoprotein particle receptor binding : ISO:RGD
GO - Biological process
  • aging : IDA:RGD
  • AMPA glutamate receptor clustering : ISO:RGD
  • amyloid precursor protein metabolic process : ISO:RGD
  • artery morphogenesis : ISO:RGD
  • cardiovascular system development : ISO:RGD
  • cellular calcium ion homeostasis : ISO:RGD
  • cellular response to cholesterol : IEP:RGD
  • cellular response to ethanol : IEP:RGD
  • cellular response to growth factor stimulus : IEP:RGD
  • cellular response to interleukin-1 : IEP:RGD
  • cGMP-mediated signaling : ISO:RGD
  • cholesterol catabolic process : ISO:RGD
  • cholesterol efflux : ISS:UniProtKB
  • cholesterol homeostasis : ISO:RGD
  • cholesterol metabolic process : ISO:RGD
  • chylomicron remnant clearance : ISS:UniProtKB
  • fatty acid homeostasis : ISO:RGD
  • G protein-coupled receptor signaling pathway : ISO:RGD
  • high-density lipoprotein particle assembly : ISS:UniProtKB
  • high-density lipoprotein particle clearance : ISO:RGD
  • high-density lipoprotein particle remodeling : ISO:RGD
  • intermediate-density lipoprotein particle clearance : ISS:UniProtKB
  • lipid homeostasis : ISO:RGD
  • lipid metabolic process : ISO:RGD
  • lipid transport : IDA:RGD
  • lipid transport involved in lipid storage : ISO:RGD
  • lipoprotein biosynthetic process : ISS:UniProtKB
  • lipoprotein catabolic process : ISO:RGD
  • lipoprotein metabolic process : IDA:RGD
  • locomotory exploration behavior : ISO:RGD
  • long-chain fatty acid transport : ISO:RGD
  • long-term memory : ISO:RGD
  • low-density lipoprotein particle remodeling : ISO:RGD
  • maintenance of location in cell : ISO:RGD
  • negative regulation of amyloid fibril formation : ISS:UniProtKB
  • negative regulation of amyloid-beta formation : ISO:RGD
  • negative regulation of blood coagulation : ISO:RGD
  • negative regulation of blood vessel endothelial cell migration : ISO:RGD
  • negative regulation of canonical Wnt signaling pathway : ISO:RGD
  • negative regulation of cellular protein metabolic process : ISO:RGD
  • negative regulation of cholesterol biosynthetic process : IDA:RGD
  • negative regulation of cholesterol efflux : ISO:RGD
  • negative regulation of dendritic spine development : ISO:RGD
  • negative regulation of dendritic spine maintenance : ISO:RGD
  • negative regulation of endothelial cell migration : ISO:RGD
  • negative regulation of endothelial cell proliferation : ISO:RGD
  • negative regulation of gene expression : ISO:RGD
  • negative regulation of inflammatory response : ISO:RGD
  • negative regulation of lipid biosynthetic process : ISO:RGD
  • negative regulation of lipid transport across blood-brain barrier : ISO:RGD
  • negative regulation of long-term synaptic potentiation : ISO:RGD
  • negative regulation of MAP kinase activity : ISO:RGD
  • negative regulation of neuron apoptotic process : IDA:RGD
  • negative regulation of neuron death : ISO:RGD
  • negative regulation of neuron projection development : ISO:RGD
  • negative regulation of phospholipid efflux : ISO:RGD
  • negative regulation of platelet activation : ISO:RGD
  • negative regulation of postsynaptic membrane organization : ISO:RGD
  • negative regulation of protein secretion : ISO:RGD
  • negative regulation of triglyceride metabolic process : ISO:RGD
  • neuron projection development : ISO:RGD
  • neuron projection regeneration : TAS:RGD
  • nitric oxide mediated signal transduction : ISO:RGD
  • NMDA glutamate receptor clustering : ISO:RGD
  • oligodendrocyte differentiation : IEP:RGD
  • peripheral nervous system axon regeneration : IEP:RGD
  • phospholipid efflux : ISO:RGD
  • positive regulation by host of viral process : ISO:RGD
  • positive regulation of amyloid-beta clearance : ISS:UniProtKB
  • positive regulation of amyloid-beta formation : ISO:RGD
  • positive regulation of axon extension : IDA:RGD
  • positive regulation of cholesterol efflux : ISO:RGD
  • positive regulation of cholesterol esterification : ISO:RGD
  • positive regulation of dendritic spine development : ISO:RGD
  • positive regulation of dendritic spine maintenance : ISO:RGD
  • positive regulation of endocytosis : ISO:RGD
  • positive regulation of ERK1 and ERK2 cascade : ISO:RGD
  • positive regulation of heparan sulfate binding : ISO:RGD
  • positive regulation of heparan sulfate proteoglycan binding : ISO:RGD
  • positive regulation of lipid biosynthetic process : ISO:RGD
  • positive regulation of lipid transport across blood-brain barrier : ISO:RGD
  • positive regulation of low-density lipoprotein particle receptor catabolic process : ISO:RGD
  • positive regulation of membrane protein ectodomain proteolysis : ISO:RGD
  • positive regulation of neurofibrillary tangle assembly : ISO:RGD
  • positive regulation of neuron death : ISO:RGD
  • positive regulation of neuron projection development : ISO:RGD
  • positive regulation of nitric-oxide synthase activity : ISO:RGD
  • positive regulation of phospholipid efflux : ISO:RGD
  • positive regulation of presynaptic membrane organization : ISO:RGD
  • positive regulation of transcription, DNA-templated : ISO:RGD
  • protein import : ISO:RGD
  • receptor-mediated endocytosis : ISO:RGD
  • regulation of amyloid fibril formation : ISO:RGD
  • regulation of amyloid precursor protein catabolic process : ISO:RGD
  • regulation of amyloid-beta clearance : ISO:RGD
  • regulation of apoptotic process : ISO:RGD
  • regulation of behavioral fear response : ISO:RGD
  • regulation of Cdc42 protein signal transduction : ISO:RGD
  • regulation of cellular response to very-low-density lipoprotein particle stimulus : ISO:RGD
  • regulation of cholesterol metabolic process : ISO:RGD
  • regulation of gene expression : ISO:RGD
  • regulation of innate immune response : ISO:RGD
  • regulation of neuron death : ISO:RGD
  • regulation of plasma lipoprotein particle levels : ISO:RGD
  • regulation of proteasomal protein catabolic process : ISO:RGD
  • regulation of protein metabolic process : ISO:RGD
  • regulation of protein-containing complex assembly : ISO:RGD
  • regulation of synapse organization : ISO:RGD
  • regulation of tau-protein kinase activity : ISO:RGD
  • regulation of triglyceride metabolic process : IDA:RGD
  • response to caloric restriction : ISO:RGD
  • response to D-galactosamine : IEP:RGD
  • response to dietary excess : ISO:RGD
  • response to ethanol : IEP:RGD
  • response to insulin : IEP:RGD
  • response to oxidative stress : ISO:RGD
  • response to retinoic acid : IEP:RGD
  • response to tumor necrosis factor : IEP:RGD
  • response to zinc ion : IEP:RGD
  • reverse cholesterol transport : ISO:RGD
  • triglyceride homeostasis : ISO:RGD
  • triglyceride metabolic process : ISO:RGD
  • triglyceride-rich lipoprotein particle clearance : ISS:UniProtKB
  • vasodilation : ISO:RGD
  • very-low-density lipoprotein particle clearance : ISS:UniProtKB
  • very-low-density lipoprotein particle remodeling : ISO:RGD
  • virion assembly : ISO:RGD
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(a) The Signal peptide D-score cutoff for "YES"(having signal peptide) is 0.45.
(b) Non-classically secreted proteins should obtain an NN-score(Neural Networks score) exceeding the normal threshold of 0.5, but not at the same time be predicted to contain a signal peptide.